Results for "Data Structure"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted to specific data structure. Currently, existing data structure for this usage can be pr...wever, assembling metagenomic datasets has proven to be computational...2698 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...iscussed ahead) in your pseudocode. Do not include data decl...2672 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The...erefore the fragment size distribution can be learned empirically for each WGS data set...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
...open source repository garu/Data-Printer - colored pretty-print of Perl data structures and objects PerlGameDe...t/fluent-logger-perl - A structured logger for Fluentd (Perl) d...plication that serves KeePass database entries on a web frontend hak...2502 days ago
- It is often necessary to import sample textbook data into R before you start worki...system. > library(gdata) ...k = loadWorkbook("mydata.xls") > df ...ocumentation > mydata = read.spss("myfile...
2502 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ry of new genes and (by reference to sequence data banks) for discovery of ident...also possessed that feature. homology -- Two structures are considered homologous wh...ed from a common ancestor which possessed the structure. This may be difficult to det...2475 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...ference sequences and RNA-seq data (k-mer based) Software (C++)...of transcripts using RNA-seq data (uses k-mers) https://c...aplogroup classifier from NGS data (k-mer based) Software (Pyth...2384 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good o...equired for MDA (single-cell) data --meta this...quired for metagenomic sample data --rna this...bling Advanced options: --dataset <filename>...
2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and...the useful links: Single Cell RNAseq data analysis Tutorial A step-by-...level analysis of single-cell RNA-seq data A step-by-step workflow for...models applied to single-cell RNA-seq data sepa...2363 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no sing...iew all of the major steps in RNA-seq data analysis, including experimen...survey of best practices for RNA-seq data analysis RNA-seq workflow: g...EBI RNA-Seq exercise An open RNA-Seq data anal...
2363 days ago
