Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...technologies. It can combine datasets produced by different tec...wever, assembling metagenomic datasets has proven to be computat...ide Assembler for Metagenomic Data SFA-SPA is a suffix array...2700 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...iscussed ahead) in your pseudocode. Do not include data d...2673 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The l...herefore the fragment size distribution can be learned empirically for each WGS data s...2536 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and softwar...nbsp;- Perl binding for Redis database pplu/aws-sdk-perl -...open source repository garu/Data-Printer - colored pretty...ver for the MySQL and MariaDB databases beide/Bootimg-scripts&n...plication that serves KeePass databa...2503 days ago
2503 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor...g of coding sequences, for discovery of new genes and (by reference to sequence data b...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...ference sequences and RNA-seq data (k-mer based) Software (C++)...of transcripts using RNA-seq data (uses k-mers) https://c...aplogroup classifier from NGS data (k-mer based) Software (Pyth...2385 days ago
2365 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and...the useful links: Single Cell RNAseq data analysis Tutorial A step-by-...-level analysis of single-cell RNA-seq data A step-by-step workflow for...models applied to single-cell RNA-seq data s...2365 days ago
2365 days ago