LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...apcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then t...1448 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classificat...1444 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...cs. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New ba...1428 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
...tion and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them with known TSSs from a public database. This package enables high-qu...1357 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...agenomes via merging of individual metagenomes Includes binning and bin checking, for retrieving individual genomes The results are stored in a database, where they can be easily exp...1354 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across al...scientists urged us to provide updates of the databases. Accordingly, we have provid...r year 2019 (Table-S7-singleyr-2019). Updated databases and code are freely availabl...1263 days ago
OGDRAW - Draw Organelle Genome Maps
...cation is optimized to create detailed high-quality maps of organellar genomes (plastid and mitochondria). Nevertheless, you can upload most database entries. Please...940 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
...al taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for the respecti...856 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and dec..., miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 cu...855 days ago
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