1943 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
...rporates a de novo phage gene-calling algorithm and assigns putative functions to gene calls using protein-, virus-, and phage-centric databases.1818 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...t values, and gene duplication and speciation events. Using these standardized elements allows interoperability between various applications and databases. Furthermore, both due to ext...1611 days ago
1546 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...f genomic regions of interest and genome coverage information sequana_taxonomy performs a quick taxonomy of your FastQ. This requires dedicated databases to be downloaded. Sequanix:...1546 days ago
1545 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...s are defined ahead of time, such as those involving Patient-Derived Xenografts (PDXs) or host-pathogen interactions. Reference protein sequence databases are used for targeted searche...1510 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
...in-drug and protein-chemical interactions are rapidly accumulating in databases such as DrugBank an...de effects i.e. they target proteins other than those known in public databases; and many proteins bind chemi...1496 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across al...cientists urged us to provide updates of the databases. Accordingly, we have provide...year 2019 (Table-S7-singleyr-2019). Updated databases and code are freely available...1268 days ago
The Breeding API (BrAPI) project
The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicating...1216 days ago