Results for "Databases"
Top-level pages
Next generation sequencing in R or bioconductor environment
...using rtracklayer to visualize alignment coverage. Documentation biomaRt The biomaRt package, provides an interface to a growing collection of databases implementing the BioMart soft...3622 days ago
Commercial and public next-gen-seq (NGS) software
...ce. C++ source. ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome alignments to a...m) is a tool for rapidly finding near exact matches in DNA or protein databases using a hash table. Developed...3516 days ago
Apps for Busy Bioinformatics Researchers !!!
...data for cell lines. Does not require a network connection for local databases. View and search PubMed in t...ele frequency in data sets, and cross-references with various genomic databases. Collaborate on variant asse...3538 days ago
- ...dge driven approach in which pathways will be identified by finding the correlation between the information in one of the pathway knowledge databases (KEGG,Reactome,Panther,BioCar...
3493 days ago
Software packages for next gen sequence analysis
.... C++ source. * ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome alignments to a...m) is a tool for rapidly finding near exact matches in DNA or protein databases using a hash table. Developed...3239 days ago
Comprehensive list of visualization tools for biological pathways
...text of metabolic pathways http://metpa.metabolomics.ca Omics Viewer Data mapping on BioCyc pathways (collection of 5500 pathway/genome databases) http://www.biocyc.org/ Pat...2284 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...based on COSMIC, OMIM, and TCGA databases Lasergene Genomics Suite...tom genome builds and annotation databases Performs base trimming, alig...echniques, depends upon multiple databases (each needing to be downloade...(i) queries of the SNP and gene databases; (ii) analysis using the atta...2906 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...dvantage of using GeneSCF over other enrichment tools is that, it performs enrichment analysis in real-time (v1.1 and above) by accessing source databases. With command-line versions o...2869 days ago
Genome Assembly Tools and Software - PART1 !!
...; assemblyManager – Computing the Robotic Commands for 2ab Assembly Clotho provides persistence to such objects through relational databases that at least partially corre...2683 days ago
Awesome perl frameworks, libraries and software - PART 1
...uckpan - DuckDuckHack OpenSource Development Application CaptTofu/DBD-mysql - DBD::mysql Perl client driver for the MySQL and MariaDB databases beide/Bootimg-scripts -...2486 days ago
