Results for "De Bruijn graph"
Top-level pages
...stq \ -o hybrid_assembly In turn, these parameters mean use 4 threads max memory is 32Gb use 3 kmer values to build the de bruijn graph(s) - 31, 51 and 71 only run...2343 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It...ead self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format....2323 days ago
List of visualization tools for network biology
Network analysis is any structured technique use...k and complex system, dynamic and hierarchical graph. https://gephi.org Igraph Collection of network analys...nd import external data http://tinyurl.com/yEdGraph/ Web tools for network analy...2280 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for impro...on of results: ABySS Explorer Interactive Java application that uses a novel graph-based representation to displ...2276 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint rea...brc.jp/alignment/software/tips.html Omega | Overlap-graph de novo Assembler for Metagen...sensitive mapping of nanopore sequencing reads with GraphMap | Nature Communications h...2234 days ago
Bioinformatics tools for genome assembly !
...S: A parallelized assembler for large genomes that uses de Bruijn graphs. Velvet: Another de Bruijn graph-based assembler optimized for...for circular bacterial genome assembly. wtdbg2: A de Bruijn graph assembler for long reads, eff...278 days ago
Mitochondrial genome assembly tools !
...ly, especially when dealing with complex datasets that may contain nuclear mitochondrial DNA sequences (numts). IDBA-UD: IDBA-UD (Iterative De Bruijn Graph De Novo Assembler) is another...235 days ago
- « Previous
- 1
- 2
- Next »
