Results for "Deep"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool s...1161 days ago
Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1154 days ago
- ...alysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its prese...t is furthermore compatible with software such as genome browsers and miRDeep.
2785 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived fr...2386 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. Scales easily to multi-gigabase genomes and deep-coverage sequencing. Quickly...2152 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiple...ing reads. It does this with a deep convolutional neural net.... Albacore and Porechop), Deepbinner identifies barcodes fro...ified reads. Reasons to use Deepbinner: To minimise the num...ou have a small/slow computer. Deepbinner is more computationally...2001 days ago
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic v...generation DNA sequencing data. DeepVariant is an analysis pipelin...-generation DNA sequencing data. DeepVariant relies on Nucleus...ttps://ai.googleblog.com/2017/12/deepvariant-highly-accurate-genome...
1577 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. ...1571 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network...e other demultiplexers (e.g. Albacore and Porechop), Deepbinner identifies barcodes fro...1561 days ago
- this is a fourth blog post in the Machine learning in Perl series, focusing on the AI::MXNet, a Perl interface to Apache MXNet, a modern and powerful machine lear...
1555 days ago
