3933 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2V...1162 days ago
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QuorUM: An Error Corrector for Illumina Reads
...We evaluate the performance of QuorUM by correcting actual Illumina reads from genomes for which a reference assembly is available. QuorUM is distributed as an independent software pa...2386 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...full advantage of multi-core processors and uses a small RAM footprint, Ready to be used on desktop computer, cluster, cloud as well as within distributed system running Hadoop. htt...2363 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operati...2352 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library und...2336 days ago