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Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus2537 days ago
- ...odule is a versatile and efficient C-based drawing library for GFF3-compatible genomic annotations. It is included in the GenomeTools distribution. Additionally, bindings to th...
2498 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It suppo...2460 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...t is freely available at https://github.com/nigyta/dfast_core/ under the GPLv3 license with external binaries bundled in the software distribution. An on-line version is also a...2356 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating syst...2328 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...me assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current SPAdes distribution, we're also releasing the Rec...2312 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much a...2297 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...terface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different conservative l...2286 days ago
Genome assembly stats plotting
...and percentage Ns CEGMA completeness Scaffold/contig length/count distribution assembly-stats supports tw...s, the limitations of this approach lie in the necessary omission of distributions and the challenge of interpr...2251 days ago
DendroPy: a Python library for phylogenetic computing
..., NeXML, Phylip, FASTA, etc. Application scripts for performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distr...2196 days ago
