MEC: Contig Misassembly Correction
...to detect the candidate misassemblies. Then, it can distinguish a large number of false positives from the candidate misassemblies based on the distribution of paired-end reads and the s...1544 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use...1528 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
...published code. We provided trained models for various depth of low-coverage sequencing Hi-C data. The depth of input data is estimated by its distribution comparing with those of the d...1517 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...ts of various types in both single-sample and matched sample scenarios. SVEngine takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (s...1394 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together...1375 days ago
1354 days ago