Useful Publications and Websites for Deep Sequencing Data Analysis
...netic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. Poland et al., PLoS One 7(2): e32253, 2012. Full Text Double digest RADseq: an inexpensive...3790 days ago
Perl one-liner for bioinformatician !!!
...u the shell warrior. Anything that took you minutes to solve, will now take you seconds!perl -pe '$\="\n"' #double space a fileperl -pe '$_ .= "\n" unless /^$/' #double space a file except blank lin...3639 days ago
Tools for Searching Repeats And Palindromic Sequences
...ng palindrome formation during gene amplification. Other studies have attempted to relate palindrome formation to molecular mechanisms involved in double stranded breaks and in the fo...2222 days ago
Converting BLAST output into CSV
...ues. To save this to a file, do: python /root/ngs-scripts/blast/blast-to-csv.py out.txt > ~out.csv If you have Excel installed, try double clicking on it.2348 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say' # Double space a file, except the blan...2313 days ago