NCBI Prokaryotic Genome Annotation Pipeline
...p;the pipeline in NCBI Handbook chapter. NCBI's annotation pipeline depends on several internal databases and is not currently available for download or use outside of the NCBI en...2541 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 ...2539 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...ilt alignments in the UCSC genome browser database, (ii) visualize and download syntenic relationships as hig...images, (iii) browse synteny blocks with genetic information and (iv) download the details of synteny blocks...2532 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE....2528 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...wk '/^S/{print ">"$2"\n"$3}' reads.gfa | fold > reads.fa And then count how many contigs: grep ">" reads.fa | wc -l # Download sample PacBio from the PBcR w...2346 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies a...2289 days ago
2279 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...ncRNAs Protein-coding Human hg19 hg19 Download Download Download Rhesus...Download Ferret musFur1 oa3 Download Download Download Opossu...844 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...pt aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes. Download http://arthropods.euge...2184 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...When the mapping has been perfomed, the individuals need to be genotyped; SEX-DETector takes files produced by Reads2snp (which is available for download on the PopPhyl website)...2161 days ago