Results for "Download"
Bio-Scripts
➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] INPUT -A|--accession Replaces accession deri...2123 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download", "ERR458494":"https://osf.io/8rvh5/download", "ERR45849...sample=SAMPLES) # rule to download each individual file specifie...
1513 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget https://www.p...2095 days ago
- ...LOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/releases/download/4.0.2.1/gatk-4.0.2.1.zip --2018-08-30 11:47:20-- https://github.com/broadinstitute/gatk/releases/download/4.0.2.1/gatk-4.0.2.1.zip Res...
2072 days ago
- ...Tools git:(master) ✗ wget https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 --2018-10-25 13:36:41-- https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 Resol...
2016 days ago
- Download page https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download Ubuntu / Debian sudo apt-get install ncbi-blast+ CentOS # download latest BLAST version wget ft...
1759 days ago
- # Convert FASTQ to FASTA seqtk seq -a IN.fastq > OUT.fasta # Convert FASTQ to FASTA and set bases of quality lower than 20 to N seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta # Download Seqtk https://github.com/lh3/seqtk
1722 days ago
Bash script to download SRA file !
...the sratoolkit to directly pull the sequence data (in paired FASTQ format) from the archive. fastq-dump is in the SRA toolkit. It allows directly downloading data from a particular seq...1556 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
...a-dev cd /usr/bin wget https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 tar -...1.9 make cd .. wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2 tar...1555 days ago
- ...l $ wget https://developer.download.nvidia.com/compute/cuda/repos...15:15:56-- https://developer.download.nvidia.com/compute/cuda/repos...ownload.nvidia.com (developer.download.nvidia.com)|192.229.232.112|:...15:19:22-- http://developer.download.nvidia.com/compute/cuda/10.2/...
1550 days ago
