Results for "EBI"
Top-level pages
Genomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mappi...3945 days ago
Bioinformatics Courses Around the World
...ty Berlin , PhD programs at the IMPRS-CBSC Univ.of Bielefeld, Naturwissenschaftliche Informatik (Master's level course) University of Tuebingen, Bioinformatics Finlan...3946 days ago
- ...e browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome.ucsc.edu/ http://www.ncbi.nlm.nih.gov/genome http://www.ebi.ac.uk/genomes/ http://flybas...
3917 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevan...3782 days ago
List of bioinformatics open source projects/software.
...) http://www.broadinstitute.org/igv/ High-performance desktop tool for interactive visual exploration of diverse genomic data IntAct http://www.ebi.ac.uk/intact/ molecular inte...3759 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ibrary for population genetics. http://webdav.tuebingen.mpg.de/ffpopsim/FLUX SIMU...egions in large diploid populations. http://www.ebi.ac.uk/projects/bargen/downloa...ypical metagenome data sets http://ab.inf.uni-tuebingen.de/software/metasim/mlcoa...3740 days ago
List of In-silico Binding Site Prediction Tools
...lower than 25%) version is available. Quaternary structures proposed by PISA (3) are used for all structures in the dataset. PDBeMotif: http://www.ebi.ac.uk/pdbe-site/pdbemotif/ is...3746 days ago
Commercial and public next-gen-seq (NGS) software
.../) to alignment Solexa reads. GMAP is free, though.Exonerate (http://www.ebi.ac.uk/~guy/exonerate/) MUMmer...l Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).SOAP (http://soap.genomics.o...3521 days ago
Software packages for next gen sequence analysis
...exa or 454. Need about 20-25X coverage and paired reads. Developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI). SNP/Indel Discovery * ssa...3245 days ago
Tools for Searching Repeats And Palindromic Sequences
...t Vital-IT For more sophisticated repeat finding you will want to look at tools using Repbase for example: CENSOR CENSOR@GIRI CENSOR@EMBL-EBI RepeatMasker MUMmer&nbs...2214 days ago
