Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repe...uplications of simple sets of DNA bases (typically 1-5bp) such...ce of a reverse transcriptase.DNA TransposonsRetrovirus Retrotr...nscription by RNA polymerase, DNA strands have upstream and dow...ucleases) designed to cut the DNA strands at specific locations...2212 days ago
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Genome Assembly Tools and Software - PART1 !!
...itable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analys...DNA sequence analysis, contig editing, file format conversion an...to Clotho such as viewing and editing data, running simulations,...hasing genomic variants using DNA sequencing reads, also called...2686 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which th...ent, compute, calculate, add, sum, multiply, ... print, display, input, output, edi...2660 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routin...F Maximum system file descriptor. $^I Value of the -i (inplace edi...2645 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-...fig-model - Perl module to create configuration editor wtih semantic validation p...S::Sass) ranguard/text-vcard - Perl package to edi...2490 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar...lly reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...sequence isolated at random from a cDNA library, used for identificat...do with any other clade. repetitive DNA -- Sequences of DNA that are...2463 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance,...t modules on CPAN for calculating the edit distance between two strings....this module. The Damerau-Levenshtein edi...2342 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detai...ome browser; this feature of MAKER provides an easy means to annotate, view and edi...2332 days ago