Results for "Encode"
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Public Databases for Bioinformatics !
...should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont want this...p.close() print "FINISHED" For use case 1 we obtained the following ENCODE and ROADMAP datasets htt...1137 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assay...ollowed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3704 days ago
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Awesome perl frameworks, libraries and software - PART 3
...utocomplete is a Perl module which gives you frequency (and optionally geolocation)-sensitive autocomplete suggestions based on your data audreyt/encode-hanconvert - [Perl] Modu...2493 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...ly (and family ID) each variant hits, variant genomic location and coding effect (based on snpEff), loss-of-function mutation annotation, selected ENCODE annotation, allele frequency...2907 days ago
Genome Assembly Tools and Software - PART1 !!
...ment to an accuracy comparable to conventional mapping based pipelines (see evaluation in the tex directory). The assembly does not only encode SNPs and short INDELs, but al...2684 days ago
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News
- ...of PR#16198.) The default method of image() has an explicit check for a numeric or logical matrix (which was always required). URLencode() will not by default encode further URLs which appear to...
3303 days ago
- Sequencing By Xpansion (SBX) is a DNA sequencing method that uses a simple biochemical reaction to encode the sequence of a DNA molecule into a highly measurable surrogate called an X...
3243 days ago
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Opportunity posts
- ...iversity of Oslo, Norway Topics: Tools and technologies for integrative bioinformatics Metagenomics Comparative genomics and phylogeny Post-ENCODE bioinformatics Gene regulati...
3895 days ago
ResearchLabs posts
- ...otation in genomic sequences. Our group also actively participates in the analysis of many eukaryotic genomes and it in involved in the NIH-funded ENCODE project. Furthermore we are m...
3532 days ago
MIT Computational Biology Group
...n with the Broad Institute and the Computational and Systems Biology initiative (CSBi) at MIT, our participation in the Epigenome Roadmap, ENCODE, and modENCODE consortia, and by several oth...3424 days ago
Video
The Story of You: ENCODE and the human genome
...ow it's used to make different types of cells and different people. The ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers and more, vis...3905 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1215 days ago
- ...JSON::Parse XML::Parser XML::Simple LWP LWP::Simple LWP::Protocol::https Archive::Extract Archive::Tar Archive::Zip CGI DBI Time::HiRes DBD::mysql Encode File::Copy::Recursive Perl::O...
2142 days ago
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MIT Computational Biology Group
My research group consists primarily of computer science graduate students and postdocs with expertise in algorithms, statistical inferences and machine learning, and sharing a passion for understanding fundamental biological problems. We work in a highly interdisciplinary environment at the i...Tags: Bioinformatics, Computational Biology, Genomics, RNAseq, NGS, Chromatin, RNA, Manolis Kellis, Chromosome, ENCODE
3424 days ago
Prof. Dr. rer. nat. Jeanette Erdmann's Lab
Her prestigious lab working on Integrative and Experimental genomics to understand the underlying mechanism thats able to define an inherited predisposition of coronary artery disease (CAD) and myocardial infarction (MI) via GWAS, different Sequencing technologies and Functional genomics. Her la...Tags: Cardiovascular disease, GWAS, Exome Sequencing, non-coding SNPs, Encode, Epigenome
2329 days ago
Comments
Comment on "Comparative genomics educational material and papers bookmarks"
...lysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was undertaken in the c...2732 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
User can also find some useful ENCODE data at http://www.gencodegenes.org/releases/17.html3680 days ago
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