Results for "End of Evolution"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ther than the add-ons that extend the functionality of Firefox...er using Reference and Paired-end Reads misFinder is a tool...sh; de novo, parallel, paired-end Sequence Assembler ABySS (Assemb...en sequence assembly tool for evolutionary genomics. Designed especia...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of t...d. All statements showing "dependency" are to be indented. Thes...else Print "failed" endif 2. Set total to z...es add one to student counter endif endwhile print the number o...tc. with careful indentation tend to fo...2671 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these...variants, mapping locations of the paired ends span within an interval [&de...reverse strand2, (b) the distance between ends is b...2534 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...nodes. All taxa occur at the endpoints of the cladogram. conv...d to have arisen later in the evolution of the clade. For example, "p...ts members and all of the descendants of that most recent common ance...is pattern. phylogeny -- The evolutionary relationships among organi...2474 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoali...ing gene k-mers profiles of the RNA-seq paired-end reads Software (Java) https.../bioinfo-ut/GenomeTester4/ Phy-Mer Reference-independent mi...2383 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for...file with interlaced forward and reverse paired-end reads -1 <filename> file with forward paired-end reads...
2363 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED dat...er data volume. NCBI's annotation pipeline depends on several internal database...of different annotations of single genomes. The extended ann...2343 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the wo...t interfaces and powerful backends. Perl is still well suited...s and web applications of tremendous value with all three. Thes...I by itself isn't the be-all, end-all of data storage and acces...rs to use mod_perl as the backend are a...2333 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match be...case, "int=t" means that the input file is paired and interleaved. For single-end reads...2326 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n...ile (emulate wc -l)perl -lne 'END { print $. }'perl -le 'print...fileperl -lne '$a++ if /^$/; END {print $a+0}'perl -le 'print...ll linesperl -alne '$t += @F; END { print $t}' # Print the tot...espace (space, tabs) from the end of ea...2314 days ago
