Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to un...me one leading method in -omics data analysis and visualization. Followi...ww.biotapestry.org/ Caleydo Visual analysis framework targeted at biomole...PathVisio Biological pathway analysis software that allows drawing,...2287 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological fu...nd quantitation of their volumes. PocketPicker Grid-based technique for the analysis of protein pockets. PocketPic...2202 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...can be directly imported for analysis.” Alignment feature: Sup...m NCBI Ingenuity Variant Analysis (QIAGEN) allows for variant...variants prior to statistical analysis of sequence based disease ass...automated set-generation and enrichment of likely functional varian...2908 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...s.org/p/197414/#197416 , 2) https://www.biostars.org/p/191532/#191540 The advantage of using GeneSCF over other enrichment tools is that, it performs enrichment analysis in real-time (v1.1 and above)...2871 days ago
2869 days ago
Genome Assembly Tools and Software - PART1 !!
...uence assembly , DNA sequence analysis, contig editing, file format...embly accuracy for downstream analysis. It combines the information...form automated comparison and analysis of any generated assemblies...Genome Assembly and Variation Analysis Cortex is an efficient and...2685 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and sof...ilities for Next-Generation Sequencing (NGS) data analysis masukomi/jsonpath-perl ...ern Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet - per...2489 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two...diagram, resulting from a cladistic analysis, which depicts a hypothetical...methods. ingroup -- In a cladistic analysis, the set of taxa which are hy...es of characters used in a cladistic analysis, either original or derived....2462 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA...hylogenetic trees using SNPs (based on k-mer analysis) Software (C) https://sourc.../mash Kraken Taxonomic assignment in metagenome analysis by exact k-mer search; L...2371 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in th...e useful links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data...on and evaluation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2350 days ago