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Results for "Estimator"

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• • Rahul Nayak@rahul

  

  kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity

  The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one.   ...

  Tags: kWIP, k-mer, weighted, inner, product, de novo, estimator, genetic, similarity

  2168 days ago

• • BioStar@biostar

  

  ALE: Assembly Likelihood Estimator

  Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly.  Depending on your genome size you may want to convert the .wig files to the BigWig format.

  Tags: ALE, Genome, Assembly, Likelihood, Estimator

  424 days ago