gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to dat...1777 days ago
Musket - a multistage k-mer spectrum based corrector
...ng. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correcti...1545 days ago
Best Practices for Variant Calling with the GATK
...ng with variants Yossi Farjoun PDF Video 03/19/15 Genotype refinement Laura Gauthier PDF Video 03/19/15 Annotation and variant evaluation David Benjamin PDF Video...1528 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data....1355 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expec...757 days ago