LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long read...2200 days ago
2151 days ago
Genome U-Plot: a whole genome visualization
...raphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromoanagenesis events. The main features of the Gen...2141 days ago
2064 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...or up to a few thousand nodes and edges interactivity controls (highlight, collapsed nodes, selection, zoom, physics, movement of nodes, tooltip, events, …) visualize rp...1961 days ago
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1949 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...only used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using these standardized ele...1628 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
...LT, ART-DeCo, and DeClone. In a few minutes, DeCoSTAR can reconstruct the evolutionary history of domains inside genes, of gene fusion and fission events, or of gene order along chrom...1602 days ago
Genome in a Bottle (GIAB) Consortium
...s, reference methods, and reference data) to enable translation of whole human genome sequencing to clinical practice. https://www.nist.gov/news-events/news/2016/09/nist-releases-ne...1580 days ago