Results for "Exploring Gene Networks"
Top-level pages
Pathway Analysis is usually performed with aim to enrich the genes with their functional inform...ological mechanisms pursue by genes. Pathway Analysis is not onl...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...3509 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and r...ool and produce others. * NextGENe - de novo and reference assem...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. * gnuma...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic...3256 days ago
Comprehensive list of visualization tools for biological pathways
...ding, visualizing and sharing gene regulatory network models ove...ml GenMAPP Visualization of gene expression and other genomic data...ment for biochemical reaction networks http://jdesigner.sourceforge...d pathways and reactions from gene lists http://www.reactome.org/sk...2300 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offer...al-based prior p(genotype) to generate posterior probabilities...end using GATK or samtools to generate) Output: out_vcf UN...e version gives comprehensive genetic report Mutadelic D...s of sequence info and neural networks to process information Input...2922 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? C...to research students in the areas of general and applied science. BD B...onsider one of these prestigious (and generous) endowments. Whitaker In...ientific knowledge and train the next generati...2951 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discove...enome.Interspersed RepeatsProcessed Pseudogenes, Retrotranscripts, SINES - Non-functional copies of RNA genes which have been reintegrated...e "able was I ere I saw elba")—with genetic...2225 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on f...ene list in the form of Entrez Gene ID (UIDs) or Official gene sy... The advantage of using GeneSCF...2885 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 &n...a29/sample.GTF) file to annotation table format. It generated two files1) Transcript w...5ae57fc8b4a14c7f4/sample.GTF_enst_annotation.txt)2) Gene wis...
2120 days ago
- alignment: the mapping of a raw sequence read to a location within a ref...quality scores for each base; usually generated by sequencing machines....structural rearrangements, including gene fusions. Phred-scaled probab...rangements. See also BCF format. NextGenerati...
2882 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence re...d Read LinkAge COCACOLA: a general framework for binning cont...many functionalities, and can generate much longer repeats than...REconstruct 16S ribosomal RNA Genes from MetagenOmic data an...interpretation and hypothesis generati...2699 days ago
