Commercial and public next-gen-seq (NGS) software
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3526 days ago
Software packages for next gen sequence analysis
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3249 days ago
Genome Assembly Tools and Software - PART1 !!
...nder study. It uses Vmatch [2] to extend seed reads (or contigs genera...stem rather than the add-ons that extend the functionality of Firefox...within error-prone regions, while extending paire-end read into long r...an twice the length of reads. The extended length of reads has a signi...2693 days ago
Tools for bacterial whole genome annotation
...a systematic comparison of different annotations of single genomes. The extended annotation assigns putative...tes the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within...2339 days ago
Gap filling or Contigs extensions tools !
...in. Let C = C0. 2. Repeat: a. Identify paired-end reads (not in C) for which one or both ends align within, or extending, contigs in C. b. Identify unpaired reads that align extending these new paired-end reads...2172 days ago
Mitochondrial genome assembly tools !
...NOVOPlasty: NOVOPlasty is a user-friendly tool designed for de novo assembly of organelle genomes, including mitochondria. It utilizes a seed-and-extend algorithm and is suitable for...249 days ago