BOL: Results for "FASTA"

Results for "FASTA"

- Rahul Nayak@rahul
Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta
Tags: Multiline, Singleline, Fasta
2063 days ago
- BioStar@biostar
Remove empty line from fasta. $ sed -i '/^$/d' standard_output.final.scaffolds_online.fasta #Empty #Fasta #Remove
Tags: Empty, Fasta, Remove
2045 days ago
- Neelam Jha@neelam
Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert
Tags: Multi, Single, Fasta, Convert
2036 days ago
- Jit@jit.aber
Tab file to FASTA file $ awk '{print ">"$1"\n"$2}' allSeq_tm.txt > allSeq_tm.fa #Fasta #Tab #Convert #Tab2Fasta
Tags: Fasta, Tab, Convert, Tab2Fasta
2015 days ago
- Jit@jit.aber
Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa #Pattern #Extract #Fasta
Tags: Pattern, Extract, Fasta
1903 days ago
- Neelam Jha@neelam
Perl onliner to add string to each of the fasta header. $ perl -p -e 's/^(>.*)$/$1-origin/g' in.fasta > out.fasta #String #Header #Fasta
Tags: String, Header, Fasta
1612 days ago
- Rahul Nayak@rahul
Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length
Tags: Fasta, Genome, Fold, Break, Length
828 days ago