Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online versio...2269 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number...2242 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times it...2228 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find t...2184 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single...2181 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-c...2146 days ago
2146 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula se...5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster than the current PBcR-...2178 days ago
LAMSA: fast split read alignment with long approximate matches
...te Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of h...sequencing error rates, the results demonstrate that it is substantially faster than the state-of-the-art l...2174 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...e for short oligonucleotide alignment. The new program features in super fast and accurate alignment for hu...olexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes...2166 days ago