Protocol for De novo Genome Assembly using Illumina Reads
...efficiency of the assembly. Read Quality Control:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540/install-fastqc-using-conda Quality trimming...1202 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...874 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...s a reference sequence] Quake: quality-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for h...3777 days ago
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Comment on "Short-read assembly using Spades !"
...e of high quality and do not contain sequencing errors or low-quality bases. This step can be performed using various tools such as Trimmomatic or FastQC. Running SPAdes: After q...413 days ago
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