Results for "Features"
Bookmarks
...PIPAx database. As for the analytics, there is gene selection, quality control, scoring distances between experiments with multiple factors. All features can be combined with powerful...3496 days ago
- Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts
3358 days ago
- ...fficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized tool sets for various analyses. It also features three sequence alignment pack...
3005 days ago
- .... Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparative studies....
3002 days ago
- ..., BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic data relative to features, manipulating and analyzing d...
2995 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. Thi...
2995 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes...Ttk offers a choice of software for identifying and annotating genomic features as well as the ability to add...2927 days ago
YASS :: genomic similarity search tool
...other simple, but interesting feature is that you can specify the seed pattern used in the search step (as provided for example by iedera). Main features of YASS are: multiple, pos...2922 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes...2911 days ago
- ...equence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get starte...
2890 days ago
