Results for "Features"
Top-level pages
...Plants: VISTA: Software for Genomics Artemis Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses w...3940 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...scovery by base alignment quality. Li H, Bioinformatics 27(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilities for comparing genomic features. Quinlan and Hall, Bioinforma...3777 days ago
Bioinformatics infrastructure speed up Indian agriculture
...ess, the national grid on bioinformatics is expected make much better sense out of huge genomic" - http://www.biospectrumindia.com/biospecindia/features/203849/supercomputing-indian-...3707 days ago
List of In-silico Binding Site Prediction Tools
...face), all calculated analytically. CASTp can be used to study surface features and functional regions of pro...ns or classes of proteins such as Kinases and the conserved structural features of their immediate environmen...3741 days ago
Next generation sequencing in R or bioconductor environment
...ing ShortRead, Rsamtools, rtracklayer, GenomicFeatures and BSgenome. Compared...find the nearest gene, exon, miRNA or custom features such as most conserved elemen...es", "DESeq", "edgeR", "leeBamViews", "GenomicFeatures", "BSgenome.Celegans.UCSC.ce2...3622 days ago
Commercial and public next-gen-seq (NGS) software
...es SNP detection, CHiP-seq, browser and other features. Commercial. Windows, Mac OS...es SNP detection, CHiP-seq, browser and other features. Commercial. Win or MacOS.Par...a. Written by Heng Li from the Sanger Centre. Features extensive supporting tools fo...3516 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-...3546 days ago
Apps for Busy Bioinformatics Researchers !!!
...allow you to search proteins on the go. Key features (Also in website): Search...ournal feeds as well as a PubMed viewer. Key Features: Look up genes by symbol o...Saccharomyces cerevisae genes and chromosomal features. Search gene names, gene desc...3539 days ago
Software packages for next gen sequence analysis
...es SNP detection, CHiP-seq, browser and other features. Commercial. Windows, Mac OS...es SNP detection, CHiP-seq, browser and other features. Commercial. Win or MacOS. *...a. Written by Heng Li from the Sanger Centre. Features extensive supporting tools fo...3240 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Genomics Workbench (QIAGEN). Features include: resequencing, workfl...g genotypic and phenotypic data; Features: Genome-wide association stud...rivate and public cloud version. Features: genomic data visualization,...annotations with gene annotation features BioR Description: (Ma...2906 days ago
