NCBI Prokaryotic Genome Annotation Pipeline
...; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. You can find a more detailed description o...2545 days ago
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LIBSVM -- A Library for Support Vector Machines
.... Working set selection using second order information for training SVM. Journal of Machine Learning Research 6, 1889-1918, 2005. You can also find a pseudo code there. (how to...2467 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...rocedure of chromosome analysis," explain the scientists. "The output of the program is Microsoft XL table and publish-ready idiogram picture." Find their paper openly published...2350 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...nnotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transp....univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en You can find the original publication in G...2345 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a F...2326 days ago
An Introduction to Applied Bioinformatics
...eing developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find information on the courses I...2255 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations...2201 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads an...2192 days ago