Results for "Flow"
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How MIRA follows for the ref based assembly?
MIRA follows for the ref based assembly (like mapping the reads on the reference with xxx, etc.) and if its possible to have a figure with the workflow.Tags: Mira, Assembly, Flow, Workflow, Reads
2856 days ago
- Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented with alluvia (sing. “alluvium”) spanning...
Tags: alluvial, diagram, R, Flow
1685 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fluent DSL simplifies the implementation and the deployment of complex parallel and reactive workflows on clouds an...Tags: Nextflow, Data-driven, computational, pipelines, Flow
1534 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note: The default file that snakemake looks for in the current working directory is the Snakefile. ...Tags: Snakemake, Pipeline, Flow, Learn
932 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.Tags: RNA-Seq, differential, expression, work, flow, DESeq2
983 days ago
