Results for "Format"
Bio-Scripts
Bash script to download SRA file !
...rectly pull the sequence data (in paired FASTQ format) from the archive. fastq-dump...#SRA stores data in a particular compressed format (SRA!) that isn't directly co...cond mate in each pair. We'll use them in this format when aligning. wget ftp://...1560 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...ector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTI...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...1551 days ago
To convert just one specific read group to fastq
...data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the project run information. esearch -db sra -query $PROJECT | efetch -format runinfo > runinfo.txt # Se...1543 days ago
- ...package lists... Done Building dependency tree Reading state information... Done The following NEW...-p out/ # Calculate stats for all samples vcf-stats file.vcf.gz -f FORMAT/DP=10:200 -p out/ # Calcul...
1526 days ago
Pack a perl program with their dependencies on Ubuntu !
...ency tree Reading state information... Done The following add...est script web.pl at https://bioinformaticsonline.com/snippets/view/41...oConTAMPR/bin$ ./web https://bioinformaticsonline.com #It return...ervices provided by the Bioinformatic Group of the Univ...1512 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer versio...
1216 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1216 days ago
- #GffRead: GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more. https://github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda...
1204 days ago
Install Install Gffcompare on Ubuntu / Linux
#Gffcompare is a program that is used to perform operations on general feature format (GFF) and general transfer format (GTF) files. It has a binary distribution compatible with the linux we’re using...824 days ago
- #Commands to run PERF PERF --format fasta -t 30 -i reference.fasta -o PERF_output.tsv --include-atomic -m 2 -M 7 -l 12
792 days ago
