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KAST: Perform Alignment-free k-tuple frequency comparisons from sequences
Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.2060 days ago
- DNA Nucleotide Counter is delivered in a DNA Baser package together with other free molecular biology tools. Download the package and double click it. The programs inside t...
2038 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used:...2010 days ago
- ...; Presently it contain software developed at G. P. S. Raghava's group (http://webs.iiitd.edu.in/raghava/ ). The programs and the package are free software for academic users....
1973 days ago
Versatile genome assembly evaluation with QUAST-LG
...) and the refactoring of alignment analyzing modules New k-mer-based completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of uppe...1968 days ago
GenoViz: Visualization software for genomics
...SourceForge to distribute new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer. If you have questions, feel free to get in touch. Contact proj...1956 days ago
Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substanti...1734 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based met...1565 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list...1565 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Com...1565 days ago
