Results for "FreeBayes"
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...In this tutorial we compare the performance of three statistically-based variant detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayesEach of these tools takes as i...3651 days ago
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Bioinformatics approach to Boar Taint
...ly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A fi...3787 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...Haplotypes: Links to 1000 Genomes and HapMap downloads Output: FreeBayes Description: finds SNPs, I...Bayesian method; combines variant calls from different methods (GATK, FreeBayes, Atlas, Samtools, etc) Input...2907 days ago
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Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also...xactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based v...1042 days ago
