3669 days ago
Bioinformatics approach to Boar Taint
...ly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A fi...3805 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Haplotypes: Links to 1000 Genomes and HapMap downloads Output: FreeBayes Description: finds SNPs, I...Bayesian method; combines variant calls from different methods (GATK, FreeBayes, Atlas, Samtools, etc) Input...2925 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also...xactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based v...1060 days ago