Entrez Direct: E-utilities on the UNIX Command Line
...cture, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from comma...rmally complete the process. EDirect also provides an argument-driven function that simplifies the extractio...2752 days ago
2744 days ago
Many-Core Engine (MCE) for Perl example
...nup, and signal handling. MCE::Util Utility functions for Many-Core Engine. MCE...rep implementation similar to the native grep function. MCE::Map Provides a parall...a Monte Carlo simulation. MCE::Subs Exports functions mapped directly to MCE metho...2649 days ago
2632 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...e genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distan...2631 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational a...in the emerging new branch of biology known as functional genomics. The book provides...erstanding of the principles and approaches of functional genomics and of the potenti...2461 days ago
2335 days ago
2334 days ago
Protein Subcellular Localization Prediction
Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computatio...2254 days ago
DendroPy: a Python library for phylogenetic computing
...s a Python library for phylogenetic computing. It provides classes and functions for the simulation, processi...lso distributed and installed as part of the libary. DendroPy can thus function as a stand-alone library for...2202 days ago