2163 days ago
Ranbow: a haplotype assembler for polyploid genomes
...to improve the accuracy of variant calling results and to infer the evolutionary history of the organismĀ“s genome. Ranbow has three main modes of function: ranbow hap: for haplotypi...2162 days ago
2179 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...ulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://...or comparing multiple draft and finished-quality sequences to identify functional elements conserved over evo...2078 days ago
vcfR: a package to manipulate and visualize VCF data in R
...ualization of variant call format (VCF) data. Functions are provided to rapidly read...files. Once VCF data is read into R a parser function extracts matrices from the VC...quality control or other purposes. Additional functions provide visualization of gen...2016 days ago
2005 days ago
regioneR: an R package for the management and comparison of genomic regions
...and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a p...iation of a set of regions with other sets of regions, functions defined over the genome or e...1969 days ago
EGAD: Ultra-fast functional analysis of gene networks
...series of highly efficient tools to calculate functional properties in networks base...and analyses. Two of the core features are: a function prediction algorithm which is...ior to guess candidates genes across multiple functional sets (calculate_multifunc,...1966 days ago
Quick tour of Genetic Algorithms !
The R package GA provides a collection of general purpose functions for optimization using genetic...hether constrained or not. Users can easily define their own objective function depending on the problem at h...1932 days ago
plumber:An R package that converts your existing R code to a web API
...Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){ list(msg = paste0...is: '", msg, "'")) } #* Plot a histogram #* @png #* @get /plot function(){ rand <- rnorm(100)...1877 days ago