KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs...2038 days ago
1984 days ago
EGAD: Ultra-fast functional analysis of gene networks
...eries of highly efficient tools to calculate functional properties in networks based...rk characterization across even thousands of functional groups to be accomplished in...or to guess candidates genes across multiple functional sets (calculate_multifunc, au...1982 days ago
1954 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...ontain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) witho...1916 days ago
1866 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-...1829 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
...ze, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in ge...1813 days ago
PANEV: an R package for a pathway-based network visualization
...ork of multiple levels (from 1 to n) of interconnected upstream and downstream pathways. The network graph visualization helps to interpret functional profiles of a cluster of gene...1560 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...ak software suite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binnin...1500 days ago