Next generation sequencing in R or bioconductor environment
...space), strand information and annotation data. Documentation...ring, parsing, and manipulation functionality for short read sequences p...ides an interface for exporting annotation feature data to various genom...eakAnno package provides. batch annotation of the peaks identified from...3626 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sang...o. But yes, SSAHASNP appears in your "SNP/INDEL discovery" category. Genome Annotation/Genome Browser/Alignment View...3520 days ago
Apps for Busy Bioinformatics Researchers !!!
...ants based on associated genes, functional impact, allele frequency in d...s required to provide continued functionality. Some of the data provided...atabases to retrieve up-to-date annotation information for over 30 speci...atabases to retrieve up-to-date annotation information for over 30specie...3543 days ago
3497 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sa...y estimates to the 454 pyrosequences. Developers at Boston College. Genome Annotation/Genome Browser/Alignment View...3244 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside...for the construction of biological pathway diagrams in a visual way and the annotation of the components and interac...2288 days ago
Binding Site Prediction in Protein !
...ediction ConSurf Identification of functional regions in proteins by surfac...e to structural restraints from those due to functional restraints. &nbs...igand-binding site prediction and functional annotation based on binding-site similar...2203 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...result is suitable for adding annotation by annovar.” HapMu...rizes effects into classes by functionality; Very popular; Standalone...tation scoRing toOL; Combined functional annotation score of nonsynony...ncer-specific High-throughput Annotation of Somatic Mutations; Last up...2910 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches o...ome.Interspersed RepeatsProcessed Pseudogenes, Retrotranscripts, SINES - Non-functional...2213 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as comman...ol for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOM...2873 days ago