LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for c...out LACHESIS, including source code, documentation and a...ng of de novo genome assemblies based on chromatin interactions. Nature Biotechnology 20...2196 days ago
ITIS: the Integrated Taxonomic Information System!
ITIS, the Integrated Taxonomic Information System! Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and t...encies (ITIS-North America); other organizations; and taxonomi...1722 days ago
jtools : more efficient presentation of regression analyses
This package consists of a series of functions created by the author (...r of functions for other programming and s...on 2.0.0, all functions dealing with interactions (e.g., interact_plot(),&...d to a new package, aptly named interactions.1557 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up prot...is designed to be user-friendly, and has been optimized for speed...nografts (PDXs) or host-pathogen inter...or installation, a user's guide, and examples. https://journals.plos.org/p...1522 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumula...es such as DrugBank and STITCH. These data usually reflect observed inter...se known in public databases; and many proteins bind chemicals other tha...1508 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1436 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61...reviewers). Interactive networks and much more. 5/20/2019: V.0.60...ted to Ensembl 96. New bacterial and fungal genomes based on STRIN...ease 96), Ensembl plants (R. 43) and E...genomes (including bacteria and fungi) are a...1445 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic a...g algorihtm of an FFT-based global search strategy and an intrinsic scoring function for nucleic acid interactions. Users are required to provid...1443 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking struc.... The new tool is easy to use and configure to detect a wide ra...pi;-stacking, and cation-π interactions. The web-server can process l...up to 150’000 docked ligand poses. The results are web-based and c...1270 days ago
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