Results for "GD"
Bio-Scripts
...erl and perl modules # DB_File and GD.pm, available from CPAN....ag # -h. require v5.6.0; use GD; use DB_File; use strict;...0:\n"; print STDERR "WARNING -- GD VERSION 1.32 REQUIRED.\n";...$pixels - $margin; $img = new GD::Image($pixels, $pixels);...2685 days ago
Perl script to find the distance beetween all the contigs and scaffolds
...the contigs and scaffolds #Usage: perl clustalReads.pl genome.fa > HammingDist.txt #Dependancy: MAFFT...eq}, $fval, ($seqRef->{$ids->[1]}{len}-$sval)-$fval; my $val = hammingDist($seq1, $seq2); print "$...2132 days ago
Installing pb-assembly on Linux !
...PCRE/8.39-foss-2016b GDAL/1.9.2-goolf-1.4.10 PCRE/8.41-GCCcore-6.4.0 GDAL/2.1.0-foss-2016a...2026 days ago
Bash command to install GATK, Bedtools and SnpEff !
...| r36h96ca727_0 193 KB r-gdata-2.18.0 | r3...kgs/r/linux-64::r-fansi-0.4.0-r36h96ca727_0 r-gdata pkgs/r/noarch::...##################################### | 100% r-gdata-2.18.0 | 1.1 MB |...1547 days ago
Install python pip and numpy on Linux / Ubuntu
...uggested packages: python-crypto-doc python-dbus-dbg python-dbus-doc python-gi-cairo libkf5wallet-bin gir1.2-gnomekeyring-1.0 python-fs python-gdata python-keyczar python-secr...1542 days ago
Pack a perl program with their dependencies on Ubuntu !
...protein-ligand structural patternsBy Neelam Jha yesterday GSP4PDBwebtoolvisualizesearchexploreprotein-ligandstructuralpatterns gdblab.com - GSP4PDB is a user-f...1503 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1434 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...
1207 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021] Starting simuG .. [Sun Jan 10 16...1203 days ago
- (JitMetaENV) ➜ wgd git:(master) pip install --us...ython3.6/site-packages (from wgd==1.2) (1.5.1) Requirement al...packages (from bokeh==1.4.0->wgd==1.2) (2.8.1) Requirement al...ges (from matplotlib>=3.0.2->wgd==1.2) (1.2.0) Requirement al...16dc8a9c Successfully built wgd bokeh ete3 PyYAML sklearn In...
1199 days ago
