2185 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study...nscriptome assembly algorithm that recovers alternatively spliced isoforms and expression levels while utilizing as man...2145 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...tions of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the Gene Expression Barcode project for tran...2139 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs...2134 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remainin...or tag clouds. More about REViGO... | Please enter a list of Gene Ontol...2117 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low c...integrates three aligners and three SV callers and generates two integrated call sets...orm downstream annotation using ANNOVAR and disease gene disco...2110 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2101 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The met...ost important feature of this method is to improve the completeness of gene regions and long-coding gene regio...2079 days ago
Heatmapper: web-enabled heat mapping for all
...rs to easily create a wide variety of heat maps for many different data types and applications. Heatmapper allows users to generate, cluster and visualize: 1) expression-based heat maps from tra...2055 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based app...additional cDNA/EST and/or protein sequences are used to predict gene struc...2052 days ago