Results for "Generate"
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...another widely used short read simulator that generates synthetic reads based on the...mulator that uses a profile-based approach to generate synthetic reads. It can simul...im: dwgsim is a short read simulator that can generate synthetic reads from whole ge...459 days ago
Comment on "Calling variants in non-diploid systems"
...l (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls...1088 days ago
- DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation
1190 days ago
Comment on "Sibelia: A comparative genomics tool"
...------------------ File name = "d3_blocks_diagram.html". "Sibelia" generates an interactive html diagram...ram are written in directory "circos" inside the output directory. To generate "Circos" diagram do followin...1329 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...rsquo;ll stick to looking at the split output file, called 04.break.broken_assembly.fa. Use this file together with the original assembly to generate a quast report. How does the...1381 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate variant calls and regions for use...1604 days ago
Comment on "Estimate Genome Size"
...ount -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t 30 /dev/fd/0 # generate a histogram jellyfish histo fastq.counts_0 > fastq.counts_0.histo # generate a pdf graph of the histogram...1942 days ago
- ...To restrict canu to only a specific stage, use: -correct - generate corrected reads -trim - generate trimmed reads -assemble - gen...z, bz2 or xz. Reads are specified by the technology they were generated with, and any processing per...
2143 days ago
- ...t, all three stages (correct, trim, assemble) are computed. To compute only a single stage, use: -correct - generate corrected reads -trim - generate trimmed reads -assemble...
2219 days ago
Comment on "Venn Diagrams on R Studio"
How can I generate a Venn diagram in R? by UCLA is also useful http://www.ats.ucla.edu/stat/r/faq/venn.htm2976 days ago
