MGRA: Breakpoint graphs and ancestral genome reconstructions
...reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produ...2474 days ago
orthodotter: Synteny plots (oxford grid)
...-- orthodotter - Plot orthologous genes on an oxford grid. -f...input file, containing orthologous genes, default is stdin...ts, use extra-option 1=dist,min_nb_genes where...of circle representing orthologous genes -format : could...2459 days ago
2347 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is m...2292 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of...2286 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...ologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...847 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a draw...2249 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less...2244 days ago
G-compass: a comparative genome browser
...ed genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2). Annotations of human genes/transcripts and their ortholo...2213 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...at Indiana University, seehttp://arthropods.eugenes.org/EvidentialGene/Constructi...assembly software, combining all evidence for genes, from expressed sequences, ge...or notes. Download http://arthropods.eugenes.org/EvidentialGene/trassembly...2187 days ago