SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located on the non recombinin...2165 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...aims to improve the completeness of both protein-coding and non-coding genes. After this tool was applied to scaffolding human contigs, the structures of both protein-coding genes and circular RNAs were almost...2152 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome...1848 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...l genomic orders with duplications. The method starts from the order of genes in modern genomes and predict...edy algorithm is used to reconstruct the ancestral orders by connecting genes into contiguous regions based...2174 days ago
2172 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2087 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...nder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently located...2018 days ago
Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
.../ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 7...2009 days ago
genoPlotR - plot gene and genome maps project!
...mes, based on gene names Add a user-generated tree Add a global scale or a scale to each line Use user-defined graphical functions to represent genes...1969 days ago
1969 days ago