kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one. ...Tags: kWIP, k-mer, weighted, inner, product, de novo, estimator, genetic, similarity
2174 days ago
Tags: DeepVariant, analysis, pipeline, deep, neural, network, genetic, variants, next-generation, DNA, sequencing, data
1567 days ago
Tags: Chromonomer, tool, repairing, enhancing, assembled, genomes, integration, genetic, maps, conserved, synteny
1545 days ago
Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes
1168 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for ...Tags: GEnView, phylogeny, comparative, genomics, software, analyze, genetic, environment, genes
865 days ago