Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified...2111 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_...mdd_hhmmss) Instrument Serial Number SMRT Cell Barcode Set Number (a.k.a. "Look Num...p;using polymerase read coordinates) readScore barcodeScore...1985 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like...1940 days ago
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Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics r...scientific.thomson.com/products/iddb/HOMIM: a knowledgebase of human genes and gene...1429 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n For...1376 days ago
10 NGS services companies around the globe !
...vices markets. The company offer comprehensive genetic testing solutions that help t...metagenomes, regulomes, pre-sequencing, NGS barcode labels, and next generation sequ...ercial next generation sequencing services and genetic tests for medical institut...1254 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Aran...nformation from raw, short-read sequencing data to genotype a wide spectrum of gene...987 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...e to classify, diagnose and eventually improve genetic disorder therapies. Similarly...of read files.This function trims adapters, barcodes and other contaminants from....spbau.ru/quastMauve assembly metrics - http://code.google.com/p/ngopt/wiki/How_T...1199 days ago