2930 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only t...res. The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days...Di Palma, F., & Lindblad-Toh, K. (2010). Genome-w...2930 days ago
Hagfish - assess an assembly through creative use of coverage plots
...ilds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Hagf...2923 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mappi...technologies, low-coverage and exome) in the 1000 Genomes...2923 days ago
2923 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.u...2921 days ago
2909 days ago
2899 days ago
2898 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome s...2182 days ago