Results for "Genome Assembly"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ilitates improved mapping and assembly of GC-biased genomes. Kozarewa et al, Nature Meth...ent de novo assembly of large genomes using compressed data structur...software package] Comparing genomes and assemblies; variant detect...aired-end RAD-seq for de novo assembly and marker design without ava...3776 days ago
List of bioinformatics open source projects/software.
...tion about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...g large nucleotide sequence alignments Staden Package Sequence assembly, editing and analysis, primar...3753 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief desc...LF A Simulation Framework for Genome Evolution http://www.cbrg.eth...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...3734 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis,...s, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...for SNP analysis: snpMatrix BSgenome BSgenome provides an object...s the biomaRt, IRanges, Biostrings, BSgenome,...3621 days ago
Commercial and public next-gen-seq (NGS) software
...na reads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...e novo Align/Assemble ABySS - Assembly By Short Sequences. ABySS is...zner from UCSD. (published in Genome Research)RMAP (A program for ma...genome (without any ab initio assembly of the reads), and all the po...3515 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-a...3545 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the o...COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...om/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...t. SimGene alsocontains an integrated genome b...3538 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bio...swar National Institute Of Immunology, New Delhi National Centre For Plant Genome R...2567 days ago
Software packages for next gen sequence analysis
...na reads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...novo Align/Assemble * ABySS - Assembly By Short Sequences. ABySS is...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux. *...genome (without any ab initio assembly of the reads), and all the po...3239 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exe...kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.j...2284 days ago
