Results for "Genome Browser"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...ty of California - Santa Cruz Genome Browser is on the FAQ list A manual for the Integrated Genome Browser visualization tool is here C...3791 days ago
List of bioinformatics open source projects/software.
...logical sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...yze and edit DNA sequence files Integrated Genome Browser http://bioviz.org/igb/ Java-based desktop genome browser Integrative Genomics Viewer...3769 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief desc...LF A Simulation Framework for Genome Evolution http://www.cbrg.eth...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...3749 days ago
Next generation sequencing in R or bioconductor environment
...analysis: snpMatrix BSgenome BSgenome provides an object...eature data to various genome browsers and file formats (such as G...omaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pack...klayer: R interface to genome browsers genoPlotR: Plotting maps of...3636 days ago
Commercial and public next-gen-seq (NGS) software
...na reads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...with Affy's Integrated Genome Browser), and produces results very s...zner from UCSD. (published in Genome Research)RMAP (A program for m...ry. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Dat...3531 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-...3561 days ago
Apps for Busy Bioinformatics Researchers !!!
...t=8 Mentha - the interactome browser: Android About: mentha - the interactome browser, is a project that offers pr...contains an integrated genome browser with information on genes, tr...ne alsocontains an integrated genome browser with information on ge...3553 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bio...swar National Institute Of Immunology, New Delhi National Centre For Plant Genome...2583 days ago
Software packages for next gen sequence analysis
...udes SNP detection, CHiP-seq, browser and other features. Commercial. Win or MacOS. * SeqMan Genome Analyser - Software for Next...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux. *...e. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Dat...3254 days ago
Comprehensive list of visualization tools for biological pathways
...or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/kegg/ Omix Visuali...er_description.shtml Pathway projector Zoomable pathway browser using KEGG atlas and Google M...2299 days ago
