Results for "Genome Project"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...C++) https://sourceforge.net/projects/trowel-ec/ Metagenomics A...from whole genome sequencing projects; provides bootstrap support...ol for MLST directly from the genome sequencing reads Software (Py...2371 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was u...pades.py will show you the options: spades.py This produces: SPAdes genome...
2351 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...es and reveal cell-type-specific expression changes in type 2 diabetes http://genome....2350 days ago
Tools for bacterial whole genome annotation
...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genomes. PAGIT: Provides a toolkit...ryotic and prokaryotic genome projects to independently annotate th...2331 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of...ing problems in simple and effective ways, and the project has produced a lot of new cod...ut mentioning the strength of the CPAN. Almost any project will benefit from the wealth...2321 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...lly uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exac...available here:https://sourceforge.net/projects/bbmap/ The sensitivity can...2314 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to...and networks http://www.zbi.uni-saarland.de/chair/projects/BioMiner Cell Illustrator&n...ation and visualization http://Pathview.r-forge.r-project.org/ PINA Integrated...2288 days ago
List of visualization tools for genome alignments
Genome browsers are useful not...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...n http://www.sourceforge.net/projects/sewal STAR A web-ba...d visualizing sequenced human genomes http://www.svaproject.org Viewer (IGV) Visu...2284 days ago
Computational resources for TE discovery and TE detection
...ransposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotat...Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...rge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bur...2274 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...view of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ering, Venn diagrams, CVA, UMI support and elastic genome...2264 days ago
